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Original Article



A computational statistical approach to assess cowpea [Vigna unguiculata (L.) Walp.] cultivars diversity and select elite genotypes from Agro-morphological and biochemical traits

Noel Dougba Dago, Jean Simon Konan Assouman, Saraka Didier Martial Yao, Nafan Diarrassouba.




Abstract

Computational statistic approaches play an essential role in the evaluation and processing of agronomic, biological, and bio-medical big data. The complexity and large size of those data make computational statistics a crucial tool in bio-statistical analysis. Based on this evidence, we characterized phenotype performances of cowpea cultivar in the Northern of Côte d’Ivoire, developing our own computational statistical approach, exclusively in the R programming language. Several packages of R have been executed to assess cowpea cultivar agro-morphological and biochemical performances. Z-score clustering analysis revealed four groups of cowpeas based on agro-morphological parameters. K-mean clustering survey revealed four and two groups of cowpea cultivar respectively for agro-morphological and biochemical parameters. The Horn parallel analysis highlighted two, four, two and two agro-explanatory components and/or agro-morphological parameters as influencing data variability respectively in the first, second, third, and fourth groups of cowpea cultivars previously revealed by the k-mean analysis. The same analysis exhibited two components in terms of biochemical parameters, inducing the variability in the two cluster groups of cowpea cultivar revealed by the k-mean survey. Integrative analysis of the ANOVA test and Tukey’s multi-comparative analysis displayed yield (agro-morphological parameter) and cowpea energetic content (biochemical parameter) as main sources of cowpea cultivar phenotypical variability (P < 0.05). Of note, receiver operating characteristic predictive analysis showed the excellent performance of both cowpea yield and energetic content in selecting cowpea genetic germplasm area under the curve (AUC = 0.9). Considering as a whole, the present computational statistical approach shows excellent performance in the evaluation, characterization, and management of agro-morphological (yield parameter) and biochemical (energetic content) features of cowpea in genetic selection procedures.

Key words: Cowpea cultivar, Agro-morphological and biochemical features, Computational statistical analysis.






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